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If you want to use one or more toolboxes with SNAP Desktop you need to do the following. Note that you can add multiple run configurations. One for plain SNAP Desktop, one which with s1tbx, one with smos, one with s2tbx and s3tbx, and so on.
You can use the previous configuration as template by copying it.

For Unix-users: In the following the ';' character is use to separate the paths. That's the seperator for Windows. On Unix based system you should use ':' instead,

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Note
titleProblems running Tests in IntelliJ IDEA

If test don't run and you see error messages in the log like the following:

gpf\src\main\java\org\esa\snap\core\gpf\doclet\SourceProductsDesc.java
Error:(19, 23) java: package com.sun.javadoc does not exist
Error:(27, 37) java: cannot find symbol
symbol: class FieldDoc
location: class org.esa.snap.core.gpf.doclet.SourceProductsDesc

Ensure that the oracle-tools profile is enabled. Sometimes IDEA forgets this setting.

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